Caporaso Left Palm Sequencing Data for Subject F4 on level 6

Mostly genus-level counts (L6) from left palm skin samples of subject F4 over time.

data(caporaso_F4LPalmL6)

Format

An object of class data.frame with 1295 rows and 133 columns.

Value

TaxonxSample matrix of size 1295 x 133

Details

Subject F4 was followed over 6 months. V4 16S region was sequenced. A counter was attached to genera appearing more than once in the count table.

References

Caporaso et al. (2011) Moving pictures of the human microbiome Genome Biology vol. 12:R50 Genome Biology

Examples

data(caporaso_F4LPalmL6)
# sort taxa by abundance and print top 10 most abundant taxa
sorted <- sort(apply(caporaso_F4LPalmL6,1,sum),decreasing = TRUE, index.return = TRUE)
rownames(caporaso_F4LPalmL6)[sorted$ix[1:10]]
#>  [1] "Corynebacterium" "Streptococcus"   "Staphylococcus"  "Cyanobacteria"  
#>  [5] "Acinetobacter"   "Pseudomonas"     "Pasteurellaceae" "Prevotella"     
#>  [9] "Fusobacterium"   "Lactobacillus"