IBD and control taxon abundances from the PRISM cohort

Species abundances extracted from whole-genome shotgun data of stool samples.

data(ibd_taxa)

Format

An object of class matrix with 201 rows and 155 columns.

Value

Species x sample matrix of size 201 x 155

Details

Samples include patients with Crohn's disease (CD, n=68) and ulcerative colitis (UC, n=53) as well as healthy controls (n=34). Species relative abundances were computed with MetaPhlAn2 and species below or equal to 0.1

References

Franzosa et al. (2019) Gut microbiome structure and metabolic activity in inflammatory bowel disease Nature Microbiology 4, 293-305 Nature Microbiology

Examples

data(ibd_taxa)