Species abundances extracted from whole-genome shotgun data of stool samples.
An object of class
matrix with 201 rows and 155 columns.
Species x sample matrix of size 201 x 155
Samples include patients with Crohn's disease (CD, n=68) and ulcerative colitis (UC, n=53) as well as healthy controls (n=34). Species relative abundances were computed with MetaPhlAn2 and species below or equal to 0.1
Franzosa et al. (2019) Gut microbiome structure and metabolic activity in inflammatory bowel disease Nature Microbiology 4, 293-305 Nature Microbiology