ibd_functions.RdFunction (i.e. enzyme-coding gene) abundances extracted from whole-genome shotgun data of stool samples.
data(ibd_functions)
An object of class data.frame with 2113 rows and 155 columns.
Function x sample matrix of size 2113 x 155
Stool samples were taken from patients with Crohn's disease (CD, n=68) and ulcerative colitis (UC, n=53) as well as healthy controls (n=34). The order of samples matches those of ibd_taxa. Functional assignment was carried out with the HUMAnN2 pipeline. Enzyme names as well as EC numbers are given.
Franzosa et al. (2019) Gut microbiome structure and metabolic activity in inflammatory bowel disease Nature Microbiology 4, 293-305 Nature Microbiology
data(ibd_functions)