Gut taxon abundances from Flores et al.

Data were obtained through 16S sequencing of the V4 region.

data(floresgut_taxa)

Format

An object of class matrix with 323 rows and 637 columns.

Value

Taxon x sample matrix of size 323 x 637

Details

OTU abundances were downloaded from QIITA in Nov 2020 (ID: 2151). Control and non-gut samples, samples with less than 10000 reads, mislabel chance above 50 were also removed. Samples were rarefied to 10000 reads and OTUs were aggregated to genus level. OTUs without a known genus were summed into a garbage taxon named sumUnknown. The resulting genus count matrix has 323 taxa and 637 samples.

References

Flores et al. (2014) Temporal variability is a personalized feature of the human microbiome Genome Biology 15, 531 Genome Biology

Examples

data(floresgut_taxa)